STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_003768CTD kinase subunit gamma. (259 aa)    
Predicted Functional Partners:
J056_000894
CTD kinase subunit alpha.
    
 
 0.978
J056_004569
Serine/threonine-protein kinase bur1.
    
 
 0.730
J056_001009
Cyclin pch1; Belongs to the cyclin family.
   
 
 0.721
J056_001430
CTD kinase subunit beta; Belongs to the cyclin family.
   
 
 0.678
J056_004085
Lysine-specific histone demethylase 1-like protein 1.
    
   0.538
J056_003648
Uncharacterized protein.
    
   0.538
J056_001306
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.527
J056_002605
Histone-lysine N-methyltransferase, H3 lysine-36 specific; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SET2 subfamily.
   
 
 0.488
J056_001012
Histone H2B; Belongs to the histone H2B family.
    
   0.457
J056_003514
L-amino-acid oxidase.
    
   0.456
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.