STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_003808Putative U3 small nucleolar RNA-associated protein 18. (477 aa)    
Predicted Functional Partners:
J056_003184
U3 small nucleolar RNA-associated protein 5.
   
 0.999
J056_002764
U3 small nucleolar RNA-associated protein 6.
   
 0.999
J056_000524
WD_REPEATS_REGION domain-containing protein.
   
 0.999
J056_004769
Periodic tryptophan protein 2-like protein.
   
 0.999
J056_004854
Putative U3 small nucleolar RNA-associated protein 13.
   
 0.999
J056_003948
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.999
J056_003444
U3 small nucleolar RNA-associated protein 4.
   
 0.999
J056_003407
Uncharacterized protein.
   
 0.999
J056_003057
U3 small nucleolar RNA-associated protein 15.
   
 0.999
J056_003173
Neuroguidin-A.
   
 
 0.998
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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