STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_001225Serine/threonine-protein kinase rio1. (839 aa)    
Predicted Functional Partners:
J056_003080
20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.
   
 0.997
J056_002532
Protein LTV1.
   
 0.993
J056_004513
40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
    
 0.993
J056_003624
40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family.
    
 0.986
J056_000550
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
    
  0.977
J056_004806
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
  0.977
J056_000184
40S ribosomal protein S9-B; Belongs to the universal ribosomal protein uS4 family.
   
  0.976
J056_001518
Casein kinase I-like protein hhp1; Belongs to the protein kinase superfamily.
    
 0.955
J056_003044
40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
 0.944
J056_000655
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
    
 0.943
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.