J056_001082 protein (Wallemia ichthyophaga) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

J056_001082

U3 small nucleolar RNA-associated protein 14. (910 aa)

Predicted Functional Partners:

J056_002679

0.999

J056_001716

0.999

J056_004233

0.999

J056_000586

0.999

J056_002728

0.998

J056_001731

0.998

J056_001947

0.998

J056_000715

0.998

J056_003948

0.998

J056_003808

0.998

Your Current Organism:

Wallemia ichthyophaga

NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
J056_000586	J056_000715	R9AL61	R9AEB2	Sas10 domain-containing protein.	U3 small nucleolar RNA-associated protein 22.	0.997
J056_000586	J056_001082	R9AL61	R9AJG3	Sas10 domain-containing protein.	U3 small nucleolar RNA-associated protein 14.	0.999
J056_000586	J056_001716	R9AL61	R9ABU3	Sas10 domain-containing protein.	Putative nucleolar complex protein 14.	0.999
J056_000586	J056_001731	R9AL61	R9AB06	Sas10 domain-containing protein.	Protein bfr2.	0.993
J056_000586	J056_001947	R9AL61	R9AB37	Sas10 domain-containing protein.	Ribosome biosis protein bms1.	0.998
J056_000586	J056_002679	R9AL61	R9A9L3	Sas10 domain-containing protein.	rRNA-processing protein FCF1-like protein.	0.999
J056_000586	J056_002728	R9AL61	R9A9H2	Sas10 domain-containing protein.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.998
J056_000586	J056_003808	R9AL61	R9AIU4	Sas10 domain-containing protein.	Putative U3 small nucleolar RNA-associated protein 18.	0.998
J056_000586	J056_003948	R9AL61	R9AHP8	Sas10 domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
J056_000586	J056_004233	R9AL61	R9AGY6	Sas10 domain-containing protein.	Putative ATP-dependent RNA helicase DHR1.	0.993
J056_000715	J056_000586	R9AEB2	R9AL61	U3 small nucleolar RNA-associated protein 22.	Sas10 domain-containing protein.	0.997
J056_000715	J056_001082	R9AEB2	R9AJG3	U3 small nucleolar RNA-associated protein 22.	U3 small nucleolar RNA-associated protein 14.	0.998
J056_000715	J056_001716	R9AEB2	R9ABU3	U3 small nucleolar RNA-associated protein 22.	Putative nucleolar complex protein 14.	0.999
J056_000715	J056_001731	R9AEB2	R9AB06	U3 small nucleolar RNA-associated protein 22.	Protein bfr2.	0.994
J056_000715	J056_001947	R9AEB2	R9AB37	U3 small nucleolar RNA-associated protein 22.	Ribosome biosis protein bms1.	0.998
J056_000715	J056_002679	R9AEB2	R9A9L3	U3 small nucleolar RNA-associated protein 22.	rRNA-processing protein FCF1-like protein.	0.995
J056_000715	J056_002728	R9AEB2	R9A9H2	U3 small nucleolar RNA-associated protein 22.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.998
J056_000715	J056_003808	R9AEB2	R9AIU4	U3 small nucleolar RNA-associated protein 22.	Putative U3 small nucleolar RNA-associated protein 18.	0.998
J056_000715	J056_003948	R9AEB2	R9AHP8	U3 small nucleolar RNA-associated protein 22.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.997
J056_000715	J056_004233	R9AEB2	R9AGY6	U3 small nucleolar RNA-associated protein 22.	Putative ATP-dependent RNA helicase DHR1.	0.988