STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_000461LisH domain-containing protein. (381 aa)    
Predicted Functional Partners:
J056_003797
Nucleoporin NSP1.
    
 0.969
J056_002343
UBA domain-containing protein 7.
    
 0.695
J056_003094
Set1 complex component swd1.
    
 0.569
J056_002719
Set1 complex component ash2.
    
 0.559
J056_000219
Histone-lysine N-methyltransferase, H3 lysine-4 specific.
   
 0.547
J056_002278
Ankyrin repeat protein nuc-2.
    
 0.508
J056_000647
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
    
 0.481
J056_002057
Nucleoporin.
    
 0.476
J056_004550
Serine/threonine-protein kinase ATG1.
    
 0.463
J056_001188
Protein transport protein SEC13; Belongs to the WD repeat SEC13 family.
    
 0.460
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.