STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_003277Uncharacterized protein. (358 aa)    
Predicted Functional Partners:
J056_003647
Transcription initiation factor TFIID subunit 12.
   
  0.956
J056_002210
Transcription initiation factor TFIID subunit 11.
    
  0.951
J056_002557
Transcription initiation factor TFIID subunit 4.
   
  0.754
J056_002260
Transcription initiation factor TFIID subunit 5.
    
 0.741
J056_003086
Transcription initiation factor TFIID subunit 13.
   
 0.736
J056_000354
Putative transcription initiation factor TFIID kDa subunit.
     
 0.696
J056_001574
Transcription initiation factor TFIID subunit 7.
    
  0.679
J056_001575
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.667
J056_003183
DNA-directed RNA polymerase II subunit rpb7.
   
 0.656
J056_003135
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
    
 0.652
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.