STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_003500Cullin-1; Belongs to the cullin family. (780 aa)    
Predicted Functional Partners:
J056_000078
Suppressor of kinetochore protein 1; Belongs to the SKP1 family.
   
 0.998
J056_004250
RING-box protein 1.
    
 0.997
J056_000886
Putative E3 ubiquitin ligase complex SCF subunit sconB.
    
 0.988
J056_004619
Ubiquitin-like protein 1.
    
 0.950
J056_000134
F-box/WD repeat-containing protein 7.
    
 0.949
J056_000953
SCF E3 ubiquitin ligase complex F-box protein grrA.
    
 0.946
J056_003230
Cullin-associated NEDD8-dissociated protein 1.
   
 0.942
J056_000211
Cell division control protein 6-like protein.
     
 0.931
J056_004145
F-box/WD repeat-containing protein 11.
   
 0.922
J056_003749
Mitosis inhibitor protein kinase wee1.
     
 0.918
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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