STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_004112SAP domain-containing protein. (176 aa)    
Predicted Functional Partners:
J056_004657
mRNA export protein mlo3.
   
 0.907
J056_000561
Uncharacterized protein.
   
 0.859
J056_004122
ATP-dependent RNA helicase SUB2.
   
 0.859
J056_002204
THO complex subunit 1.
    
 0.825
J056_003867
Uncharacterized protein.
   
 0.817
J056_001681
Pre-mRNA-splicing factor spp2.
   
 0.745
J056_000409
THO complex subunit 5-like protein.
    
 0.745
J056_003011
THO complex subunit 3.
     
 0.738
J056_002031
ATP-dependent RNA helicase FAL1; Belongs to the DEAD box helicase family.
   
 0.689
J056_002084
RNA-binding protein 8A.
   
 
  0.688
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.