STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_004132Transcription elongation factor S-II. (277 aa)    
Predicted Functional Partners:
J056_001575
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.997
J056_001306
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.996
J056_002263
DNA-directed RNA polymerase II subunit RPB9.
   
 0.996
J056_003135
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
   
 0.994
J056_003758
DNA-directed RNA polymerase II subunit RPB3.
   
 0.993
J056_004575
DNA-directed RNA polymerase II subunit rpb4.
   
 0.992
J056_003609
DNA-directed RNA polymerase II subunit rpb11.
   
 0.992
J056_004594
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
   
 0.987
J056_002722
Transcription elongation factor SPT6.
    
 0.986
J056_003183
DNA-directed RNA polymerase II subunit rpb7.
    
 0.980
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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