STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_003047Sphingoid long chain base kinase 4. (479 aa)    
Predicted Functional Partners:
J056_001136
Sphingosine-1-phosphate lyase.
 
 
 0.948
J056_000583
Dihydrosphingosine 1-phosphate phosphatase.
   
 0.944
J056_000941
3-ketodihydrosphingosine reductase TSC10.
     
 0.937
J056_001356
Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.
   
 0.936
J056_004289
Sphingolipid delta(4)-desaturase; Delta(4)-fatty-acid desaturase which introduces a double bond at the 4-position in the long-chain base (LCB) of ceramides.
    
 0.930
J056_003251
Sphingosine N-acyltransferase lag1.
     
 0.918
J056_003238
Sphingosine N-acyltransferase lac1.
     
 0.918
J056_003046
Sphingoid long chain base kinase 4.
  
  
 
0.901
J056_002198
Ceramide very long chain fatty acid hydroxylase; Ceramide hydroxylase involved in the hydroxylation of sphingolipid-associated very long chain fatty acids. Postulated to hydroxylate the very long chain fatty acid of dihydroceramides and phytoceramides at C-2; Belongs to the sterol desaturase family. SCS7 subfamily.
    
 
 0.669
J056_002739
T-complex protein 1 subunit alpha.
    
  0.614
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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