STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_003917WD_REPEATS_REGION domain-containing protein. (552 aa)    
Predicted Functional Partners:
J056_002027
mRNA export factor elf1.
   
    0.975
J056_004692
Ribosome assembly protein rrb1.
   
  
0.923
J056_002335
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
 
 0.922
J056_000695
Putative rRNA-processing protein ebp2.
   
 
 0.913
J056_003176
Ribosome biosis protein brx1.
   
 
 0.903
J056_001346
Ribosome production factor 2-like protein.
   
 
 0.892
J056_000524
WD_REPEATS_REGION domain-containing protein.
   
  
 0.892
J056_004283
Nucleolar protein 12.
   
 
 0.866
J056_001027
Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.
   
  
 0.863
J056_004854
Putative U3 small nucleolar RNA-associated protein 13.
   
  
 0.860
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.