STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_003102Vesicular-fusion protein sec18. (734 aa)    
Predicted Functional Partners:
J056_000659
Vesicular-fusion protein SEC17.
   
 0.993
J056_004373
Syntaxin-like protein psy1.
   
 0.969
J056_000502
Syntaxin-22; Belongs to the syntaxin family.
   
 0.949
J056_001514
Protein sly1; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.944
J056_004403
Protein transport protein sec9.
   
 
 0.921
J056_000190
Synaptobrevin-like protein 1.
   
 0.906
J056_000402
Synaptobrevin-like protein YKT6; Belongs to the synaptobrevin family.
    
 0.896
J056_002563
Protein transport protein SEC22; Belongs to the synaptobrevin family.
    
 0.893
J056_004083
t-SNARE VTI1.
   
 0.877
J056_004585
Integral membrane protein sed5; Belongs to the syntaxin family.
    
 0.869
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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