STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_002036Cation-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type V subfamily. (1147 aa)    
Predicted Functional Partners:
J056_002672
Calcium channel YVC1.
 
    
 0.869
J056_002110
Meiotically up-regulated 89 protein; Belongs to the CDC50/LEM3 family.
    
 0.528
J056_000402
Synaptobrevin-like protein YKT6; Belongs to the synaptobrevin family.
 
    
 0.525
J056_004617
Glycolipid transfer protein.
 
      0.513
J056_003809
Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium.
  
 
0.498
J056_003500
Cullin-1; Belongs to the cullin family.
 
  
   0.490
J056_001976
30S ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.
 
      0.467
J056_004755
Putative ATP-dependent RNA helicase.
 
 
    0.439
J056_002164
Protein cft1.
   
    0.412
J056_001762
Manganese transporter pdt1.
    
 0.403
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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