STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_002086Transcription initiation factor IIE subunit beta. (528 aa)    
Predicted Functional Partners:
J056_004780
Transcription initiation factor IIE subunit alpha.
   
 0.963
J056_004596
Transcription initiation factor IIF subunit beta.
   
 0.960
J056_002237
RNA polymerase II transcription factor B subunit 3.
   
 0.957
J056_000041
Putative DNA repair helicase ercc3.
    
 0.956
J056_004598
Suppressor of stem-loop protein 1.
   
 0.949
J056_004310
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.948
J056_003680
Serine/threonine-protein kinase crk1; Belongs to the protein kinase superfamily.
   
 0.947
J056_003261
DNA repair helicase rad15.
    
 0.946
J056_004697
General transcription factor IIH subunit 3.
    
 0.944
J056_002953
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.940
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.