STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_002165Ras-related protein RABC1. (224 aa)    
Predicted Functional Partners:
J056_002325
Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.
   
 0.738
J056_004116
Ras-related protein Rab-6A.
  
 
0.714
J056_000658
Rab proteins geranylgeranyltransferase component A.
   
 0.682
J056_002596
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
     
 0.670
J056_004433
Geranylgeranyl transferase type-2 subunit alpha.
    
 0.670
J056_003416
Actin-related protein 10; Belongs to the actin family.
   
 
 0.648
J056_001246
Dynactin subunit 4.
   
 
  0.638
J056_003924
Dynactin subunit 6.
     
 0.631
J056_003614
Syntaxin ufe1.
   
  
 0.610
J056_002686
Uncharacterized protein.
   
 
  0.591
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.