STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_002093Putative uroporphyrinogen-III C-methyltransferase; Belongs to the precorrin methyltransferase family. (609 aa)    
Predicted Functional Partners:
J056_002332
Uroporphyrinogen-III synthase.
  
 
 0.987
J056_000268
Uroporphyrinogen decarboxylase.
    
 0.971
J056_004471
Sulfite reductase subunit beta.
  
 
 0.948
J056_002491
Phosphoadenosine phosphosulfate reductase.
 
  
 0.925
J056_001362
Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.
  
  
 0.864
J056_000532
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
 
  
 0.862
J056_000049
Putative sulfite reductase flavoprotein component.
 
 
 0.847
MET3
Sulfate adenylyltransferase; Catalyzes the first intracellular reaction of sulfate assimilation, forming adenosine-5'-phosphosulfate (APS) from inorganic sulfate and ATP. Plays an important role in sulfate activation as a component of the biosynthesis pathway of sulfur-containing amino acids. In the N-terminal section; belongs to the sulfate adenylyltransferase family.
  
  
 0.815
J056_002312
Endonuclease V.
    
 0.730
J056_003267
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
     
 0.654
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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