STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_002128Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (162 aa)    
Predicted Functional Partners:
J056_003797
Nucleoporin NSP1.
   
 0.997
J056_001750
Peptidylprolyl isomerase.
 
 0.956
J056_004187
GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.
   
 0.938
J056_003591
Ran-specific GTPase-activating protein 1.
 
 
 0.934
J056_000647
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.893
J056_002510
50S ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.
   
 
 0.890
J056_003523
50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.890
J056_001357
Ribosomal_L18e/L15P domain-containing protein.
   
   0.884
J056_000223
Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.
   
   0.884
J056_001487
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.883
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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