STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_002315Translation machinery-associated protein 20; Involved in translation; Belongs to the TMA20 family. (187 aa)    
Predicted Functional Partners:
J056_002186
Translation machinery-associated protein 22.
   
 
 0.990
J056_001678
Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.
 
 
    0.905
J056_000909
Protein translation factor SUI1.
   
 
 0.848
J056_001420
40S ribosomal protein S28.
    
   0.552
J056_001192
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
   
   0.550
J056_000701
40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.
   
   0.541
RPS1
40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.
    
   0.538
J056_003044
40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
    
   0.538
J056_004652
Eukaryotic translation initiation factor 2D.
    
 
0.534
J056_000550
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
   
   0.506
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.