STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_000374GIDA_assoc domain-containing protein. (658 aa)    
Predicted Functional Partners:
J056_003073
TrmE-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
 0.971
J056_003033
Putative vacuolar protein sorting-associated protein C2G11.03c; Belongs to the STXBP/unc-18/SEC1 family.
 
      0.900
J056_003522
tRNA-specific 2-thiouridylase MnmA.
  
 0.830
J056_003714
Transcriptional activator HAP2.
 
      0.593
J056_004341
Thioredoxin domain-containing protein C2F3.12c.
   
 
 0.573
J056_003695
Methionyl-tRNA formyltransferase.
  
  
 0.553
J056_000378
Deoxyuridine 5'-triphosphate nucleotidohydrolase.
  
  
 0.549
J056_002763
Cardiolipin synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
    
 0.538
J056_001161
3-phosphoshikimate 1-carboxyvinyltransferase; The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis. In the 2nd section; belongs to the EPSP synthase family. In the 4th section; belongs to the type-I 3-dehydroquinase family. In the N-terminal section; belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family.
 
    0.500
J056_002008
tRNA pseudouridine synthase 1.
      
 0.457
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.