STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_000147Histone deacetylase clr3. (686 aa)    
Predicted Functional Partners:
J056_000339
Transcription factor prr1.
    
 0.955
J056_003797
Nucleoporin NSP1.
     
 0.952
J056_000231
Paired amphipathic helix protein pst1.
   
 0.787
J056_001066
Histone acetyltransferase type B subunit 2.
   
 0.759
J056_004658
SANT domain-containing protein.
    
 0.692
J056_000694
Cell division control protein 48; Belongs to the AAA ATPase family.
    
 0.678
J056_001842
Uncharacterized protein.
    
 0.665
J056_001652
Chromatin modification-related protein EAF3.
    
 0.649
J056_002394
Heat shock factor protein.
    
  0.638
J056_001317
Protein wos2.
   
  0.629
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.