J056_000067 protein (Wallemia ichthyophaga) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

J056_000067

Peroxisomal biosis factor 3. (433 aa)

Predicted Functional Partners:

J056_003641

0.999

J056_003872

0.934

J056_004016

0.924

J056_003139

0.886

J056_003327

0.880

J056_004437

0.874

J056_004760

0.840

J056_003699

0.735

J056_001676

0.729

J056_000299

0.729

Your Current Organism:

Wallemia ichthyophaga

NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
J056_000067	J056_000299	R9ARQ4	R9ASB6	Peroxisomal biosis factor 3.	Uncharacterized protein.	0.729
J056_000067	J056_001676	R9ARQ4	R9ABQ2	Peroxisomal biosis factor 3.	Uncharacterized protein.	0.729
J056_000067	J056_003139	R9ARQ4	R9AN79	Peroxisomal biosis factor 3.	Peroxisomal membrane protein pex14.	0.886
J056_000067	J056_003327	R9ARQ4	R9AL27	Peroxisomal biosis factor 3.	Peroxisomal membrane protein PMP27.	0.880
J056_000067	J056_003641	R9ARQ4	R9AIM4	Peroxisomal biosis factor 3.	Peroxisome biosis protein 19-1; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.999
J056_000067	J056_003699	R9ARQ4	R9AIJ5	Peroxisomal biosis factor 3.	Protein SYM1; Belongs to the peroxisomal membrane protein PXMP2/4 family.	0.735
J056_000067	J056_003872	R9ARQ4	R9ANE4	Peroxisomal biosis factor 3.	Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.	0.934
J056_000067	J056_004016	R9ARQ4	R9AI53	Peroxisomal biosis factor 3.	Peroxisomal membrane protein PEX13.	0.924
J056_000067	J056_004437	R9ARQ4	R9ALZ8	Peroxisomal biosis factor 3.	Peroxisomal membrane protein PEX16.	0.874
J056_000067	J056_004760	R9ARQ4	R9AFG3	Peroxisomal biosis factor 3.	Mitochondrial fission 1 protein; Has a role in mitochondrial fission.	0.840
J056_000299	J056_000067	R9ASB6	R9ARQ4	Uncharacterized protein.	Peroxisomal biosis factor 3.	0.729
J056_000299	J056_003139	R9ASB6	R9AN79	Uncharacterized protein.	Peroxisomal membrane protein pex14.	0.732
J056_000299	J056_003641	R9ASB6	R9AIM4	Uncharacterized protein.	Peroxisome biosis protein 19-1; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.849
J056_000299	J056_003699	R9ASB6	R9AIJ5	Uncharacterized protein.	Protein SYM1; Belongs to the peroxisomal membrane protein PXMP2/4 family.	0.400
J056_000299	J056_003872	R9ASB6	R9ANE4	Uncharacterized protein.	Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.	0.735
J056_000299	J056_004016	R9ASB6	R9AI53	Uncharacterized protein.	Peroxisomal membrane protein PEX13.	0.762
J056_000299	J056_004437	R9ASB6	R9ALZ8	Uncharacterized protein.	Peroxisomal membrane protein PEX16.	0.607
J056_000299	J056_004760	R9ASB6	R9AFG3	Uncharacterized protein.	Mitochondrial fission 1 protein; Has a role in mitochondrial fission.	0.697
J056_001676	J056_000067	R9ABQ2	R9ARQ4	Uncharacterized protein.	Peroxisomal biosis factor 3.	0.729
J056_001676	J056_003139	R9ABQ2	R9AN79	Uncharacterized protein.	Peroxisomal membrane protein pex14.	0.732