STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_002978Methyltransferase-like protein 14; Belongs to the MT-A70-like family. (496 aa)    
Predicted Functional Partners:
J056_001511
N6-adenosine-methyltransferase 70 kDa subunit; Belongs to the MT-A70-like family.
  
 
0.999
J056_000041
Putative DNA repair helicase ercc3.
  
    0.796
J056_002109
YTH domain family protein 2.
  
   
 0.716
J056_002824
YTH domain-containing protein 2.
  
 
 0.714
J056_000752
Putative methyltransferase-like protein C27D7.08c.
   
  
 0.665
J056_003183
DNA-directed RNA polymerase II subunit rpb7.
   
 
  0.633
J056_000755
Nuclear cap-binding protein subunit 2.
   
 
  0.632
J056_002263
DNA-directed RNA polymerase II subunit RPB9.
   
 
  0.623
J056_002976
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
   
 
  0.622
J056_003758
DNA-directed RNA polymerase II subunit RPB3.
   
 
 0.619
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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