STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_002024Symplekin. (1118 aa)    
Predicted Functional Partners:
J056_001884
mRNA 3'-end-processing protein YTH1.
   
 0.999
J056_003625
Endoribonuclease YSH1.
   
 0.999
J056_002969
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.999
J056_003942
Polyadenylation factor subunit 2.
    
 0.999
J056_002164
Protein cft1.
    
 0.999
J056_000167
Pre-mRNA polyadenylation factor fip1.
    
 0.999
J056_001868
Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.
   
 0.994
J056_003062
mRNA 3'-end-processing protein RNA14.
    
 0.994
J056_000214
RNA polymerase II subunit A C-terminal domain phosphatase SSU72.
   
 
 0.994
J056_000598
Uncharacterized protein.
    
 0.992
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.