STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_002139Vacuolar protein sorting-associated protein 54. (1267 aa)    
Predicted Functional Partners:
J056_003540
Vacuolar protein sorting-associated protein 52-like protein.
    
 0.995
J056_002142
Vacuolar protein sorting-associated protein 53-like protein.
   
 0.955
J056_000831
Thioredoxin reductase.
   
 0.933
J056_000984
Conserved oligomeric golgi family complex subunit 4.
    
 0.855
J056_004488
Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events.
    
 0.854
J056_004497
Conserved oligomeric golgi family complex subunit 3.
     
 0.851
J056_004116
Ras-related protein Rab-6A.
    
 0.818
J056_003102
Vesicular-fusion protein sec18.
   
 
 0.735
J056_004083
t-SNARE VTI1.
     
 0.734
J056_000608
Conserved oligomeric golgi family complex subunit 1.
     
 0.699
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.