STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_002219Uncharacterized protein. (214 aa)    
Predicted Functional Partners:
J056_003649
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 0.968
J056_004250
RING-box protein 1.
    
 0.865
J056_002343
UBA domain-containing protein 7.
    
 0.840
J056_003419
Cullin-3; Belongs to the cullin family.
    
 0.831
J056_003500
Cullin-1; Belongs to the cullin family.
    
 0.831
J056_001170
General transcriptional corepressor ssn6.
    
 0.822
J056_000256
Proteasome endopeptidase complex; Belongs to the peptidase T1A family.
    
 0.682
J056_003207
Polyubiquitin-A.
    
 0.680
J056_002858
NEDD8-conjugating enzyme UBC12; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.679
J056_004619
Ubiquitin-like protein 1.
    
 0.674
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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