STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_000200CUE domain-containing protein. (181 aa)    
Predicted Functional Partners:
J056_000565
CCR4-NOT transcription complex subunit 1.
   
 0.959
J056_000295
General negative regulator of transcription subunit 3.
    
 0.958
J056_003175
Cell differentiation protein rcd1.
    
 0.957
J056_002427
General negative regulator of transcription subunit 4.
    
 0.911
J056_001967
CCR4-NOT transcription complex subunit 7.
   
 0.910
J056_003640
Glucose-repressible alcohol dehydrogenase transcriptional effector.
    
 0.901
J056_002826
Uncharacterized protein.
    
 0.839
J056_004531
Ubiquitin-conjugating enzyme E2-18 kDa; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.736
J056_000666
DNA topoisomerase 2-associated protein pat1.
    
 
 0.689
J056_002020
ERAD-associated E3 ubiquitin-protein ligase doa10.
    
 
 0.679
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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