STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I595_1224Uroporphyrinogen III synthase HEM4. (248 aa)    
Predicted Functional Partners:
I595_3064
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
  
 0.985
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
  
 
 0.904
I595_831
Uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
  
 
 0.904
I595_3055
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
  
 0.828
I595_1223
Hypothetical protein.
       0.791
I595_2101
Hypothetical protein.
  
     0.770
I595_693
Hypothetical protein.
  
     0.769
I595_582
Hypothetical protein.
  
     0.755
I595_890
Putative auxin-regulated protein.
  
     0.753
I595_1590
Hypothetical protein.
  
     0.745
Your Current Organism:
Croceitalea dokdonensis
NCBI taxonomy Id: 1300341
Other names: C. dokdonensis DOKDO 023, Croceitalea dokdonensis DOKDO 023
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