STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I595_1287TonB-dependent receptor. (947 aa)    
Predicted Functional Partners:
I595_1286
3-phytase.
 
   
 0.923
I595_3161
Ragb/susd domain-containing protein.
  
 
   0.502
I595_2908
FG-GAP repeat protein.
  
 
   0.500
I595_3139
Hypothetical protein.
  
 
   0.486
I595_2873
HNH homing endonuclease.
  
     0.483
I595_2147
Two component regulator three Y domain-containing protein.
  
 
   0.465
I595_1520
RagB/SusD domain protein.
  
 
   0.452
rpmA
50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
       0.451
I595_1884
Outer membrane receptor protein.
  
  
0.438
I595_677
Secreted protein with Por secretion system C-terminal sorting domain.
  
 
   0.431
Your Current Organism:
Croceitalea dokdonensis
NCBI taxonomy Id: 1300341
Other names: C. dokdonensis DOKDO 023, Croceitalea dokdonensis DOKDO 023
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.