STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I595_2066Phytoene desaturase, neurosporene or lycopene producing / 4,4'-diapolycopene oxidase. (489 aa)    
Predicted Functional Partners:
I595_2064
Phytoene synthase.
 
 0.996
I595_2067
Putative membrane protein.
 
  
 0.963
I595_2065
Beta-carotene hydroxylase.
 
   
 0.908
I595_2063
Phytoene desaturase.
 
  
 
0.884
I595_2062
Regulatory protein MerR.
 
  
 0.865
I595_2068
Spheroidene monooxygenase.
 
  
 0.695
I595_1661
Lycopene beta and epsilon cyclase.
 
 
 0.481
I595_410
Magnesium chelatase subunit ChlI family protein.
  
 
 0.406
Your Current Organism:
Croceitalea dokdonensis
NCBI taxonomy Id: 1300341
Other names: C. dokdonensis DOKDO 023, Croceitalea dokdonensis DOKDO 023
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.