STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I595_3245Lipoprotein releasing system ATP-binding protein LolD. (312 aa)    
Predicted Functional Partners:
I595_3246
ABC-2 type exporter, permease component.
  
 0.963
I595_3247
Potassium efflux system KefA protein / Small-conductance mechanosensitive channel.
       0.816
I595_3109
Phosphonate-transporting ATPase.
     0.640
I595_3244
Hypothetical protein.
       0.539
I595_3248
Sigma-54 dependent two-component system-Response regulator.
       0.505
I595_1660
Putative isoprenoid biosynthesis related protein; Belongs to the FPP/GGPP synthase family.
  
     0.446
metG
Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
     0.416
Your Current Organism:
Croceitalea dokdonensis
NCBI taxonomy Id: 1300341
Other names: C. dokdonensis DOKDO 023, Croceitalea dokdonensis DOKDO 023
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.