STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I595_3255Hypothetical protein. (163 aa)    
Predicted Functional Partners:
icmF
B12 binding domain / kinase domain / Methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
    
 0.769
I595_2168
Methylmalonyl-CoA mutase.
    
 0.686
trpB
Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
   
  0.676
I595_1844
Beta-lactamase domain protein.
  
 
 0.649
I595_2517
Metallo-beta-lactamase superfamily protein.
  
 
 0.641
I595_3254
Hypothetical protein.
       0.572
I595_50
GCN5-related N-acetyltransferase.
  
     0.521
I595_1583
Hypothetical protein; Belongs to the UPF0403 family.
  
     0.484
I595_1133
4Fe-4S ferredoxin.
   
    0.477
I595_207
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
   
    0.477
Your Current Organism:
Croceitalea dokdonensis
NCBI taxonomy Id: 1300341
Other names: C. dokdonensis DOKDO 023, Croceitalea dokdonensis DOKDO 023
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