STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I595_3329Alpha-L-rhamnosidase. (1082 aa)    
Predicted Functional Partners:
I595_3328
AraC protein arabinose-binding/dimerization.
 
     0.866
I595_3332
Putative L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
     0.849
I595_3322
Glycosyl hydrolase family 2, sugar binding domain protein.
  
     0.769
I595_3280
Hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.765
I595_3341
Hypothetical protein; Belongs to the glycosyl hydrolase 43 family.
 
     0.764
I595_3338
Glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 2 family.
  
     0.759
I595_3334
RhaT l-rhamnose-proton symport 2.
 
     0.749
I595_3386
Class II aldolase/adducin family protein.
  
     0.724
I595_3367
Putative beta-glycosidase Glycoside hydrolase, family 2; Belongs to the glycosyl hydrolase 2 family.
  
   0.720
I595_3320
Hypothetical protein.
  
     0.602
Your Current Organism:
Croceitalea dokdonensis
NCBI taxonomy Id: 1300341
Other names: C. dokdonensis DOKDO 023, Croceitalea dokdonensis DOKDO 023
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