STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I595_3474Membrane protein. (213 aa)    
Predicted Functional Partners:
I595_3473
RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.865
I595_1453
AAA-4 family protein.
  
     0.730
I595_1790
Hypothetical protein.
  
     0.698
I595_603
LysM domain protein.
  
     0.698
I595_3444
Ribonuclease Z.
  
     0.681
I595_1227
Membrane protein YwdK.
  
     0.680
I595_176
Hypothetical protein.
  
     0.680
I595_2274
Hypothetical protein.
  
     0.677
I595_2560
Aspartic peptidase, family A2.
  
     0.660
I595_2630
Hypothetical protein.
  
     0.659
Your Current Organism:
Croceitalea dokdonensis
NCBI taxonomy Id: 1300341
Other names: C. dokdonensis DOKDO 023, Croceitalea dokdonensis DOKDO 023
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.