STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I596_1713Putative nucleoside-diphosphate sugar epimerase. (629 aa)    
Predicted Functional Partners:
I596_1712
UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase.
 
   
 0.890
I596_3140
Mannose-6-phosphate isomerase, type 2.
  
  
 0.824
I596_1120
Putative polysaccharide export protein, outer membrane.
  
  
 0.757
I596_3628
Glycosyltransferase, group 2 family protein.
  
  
 0.750
I596_3025
Glycosyltransferase.
  
  
 0.732
I596_1153
Sugar transferase.
 
  
 0.694
I596_1710
Hypothetical protein.
       0.676
lapB
Putative N-acetylglucosaminyl transferase; Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane; Belongs to the LapB family.
       0.676
I596_1714
UTP-glucose-1-phosphate uridylyltransferase.
  
  
 0.616
I596_3787
Hypothetical protein.
  
  
 0.614
Your Current Organism:
Dokdonella koreensis
NCBI taxonomy Id: 1300342
Other names: D. koreensis DS-123, Dokdonella koreensis DS-123
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