STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
murJPutative peptidoglycan biosynthesis protein MurJ. (562 aa)    
Predicted Functional Partners:
I598_0904
Hypothetical protein.
 
   
 0.959
mctB
Copper transporter MctB precursor.
 
     0.949
garA_2
Glycogen accumulation regulator GarA.
  
 
 
 0.912
I598_0906
Hypothetical protein; Thiamine pyrophosphokinase C terminal.
 
     0.901
tlyA
16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA.
     
 0.757
recN
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
       0.742
ppnK_1
Inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
       0.742
I598_0653
Hypothetical protein.
  
     0.723
pyrG
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
   
   0.672
I598_2773
Hypothetical protein.
 
     0.661
Your Current Organism:
Isoptericola dokdonensis
NCBI taxonomy Id: 1300344
Other names: I. dokdonensis DS-3, Isoptericola dokdonensis DS-3
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