STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LF41_2109Nitroreductase. (387 aa)    
Predicted Functional Partners:
LF41_2111
Adenylate cyclase.
 
     0.754
birA
Biotin-protein ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
  
    0.649
LF41_3099
Uroporphyrin-III c-methyltransferase protein.
  
  
  0.591
LF41_2110
Hypothetical protein.
       0.563
LF41_110
Molybdopterin biosynthesis protein MoeB.
    
  0.559
LF41_3147
AMP-ligase.
  
 
   0.512
LF41_3124
Dehydratase.
  
 
   0.500
LF41_2714
2,4-dienoyl-CoA reductase [NADPH].
    
 0.475
LF41_150
Long-chain-fatty-acid-CoA ligase.
    
   0.437
LF41_2122
AMP-dependent synthetase/ligase.
    
   0.437
Your Current Organism:
Lysobacter dokdonensis
NCBI taxonomy Id: 1300345
Other names: L. dokdonensis DS-58, Lysobacter dokdonensis DS-58
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