STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I603_2514Agglutination protein. (459 aa)    
Predicted Functional Partners:
I603_2511
Type I secretion membrane fusion protein, HlyD.
 
  0.951
I603_2513
ATP-binding cassette, subfamily C.
 
     0.911
I603_2516
Structural toxin protein RtxA.
 
    0.859
I603_2515
OmpA/MotB.
  
 
 0.709
I603_2512
SleB-like protein.
       0.627
I603_0091
Efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.566
I603_1505
HlyD-family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
   
  0.543
I603_1640
Membrane-fusion protein.
   
  0.543
I603_2353
RND efflux membrane fusion protein.
   
  0.543
I603_0366
RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
   
  0.499
Your Current Organism:
Porphyrobacter dokdonensis
NCBI taxonomy Id: 1300349
Other names: P. dokdonensis DSW-74, Porphyrobacter dokdonensis DSW-74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.