Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Gasu_02440 | Gasu_04630 | M2Y9C8 | M2Y8J8 | DNA-directed RNA polymerase II subunit D. | Uncharacterized protein. | 0.586 |
Gasu_02440 | Gasu_18000 | M2Y9C8 | M2XLI8 | DNA-directed RNA polymerase II subunit D. | DNA-directed RNA polymerase II subunit I. | 0.999 |
Gasu_02440 | Gasu_25550 | M2Y9C8 | M2W3A7 | DNA-directed RNA polymerase II subunit D. | Mediator of RNA polymerase II transcription subunit 31; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.970 |
Gasu_02440 | Gasu_26550 | M2Y9C8 | M2XIZ1 | DNA-directed RNA polymerase II subunit D. | Transcription initiation factor TFIIB. | 0.995 |
Gasu_02440 | Gasu_26830 | M2Y9C8 | M2W2I2 | DNA-directed RNA polymerase II subunit D. | Mediator of RNA polymerase II transcription subunit 7; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. | 0.963 |
Gasu_02440 | Gasu_34130 | M2Y9C8 | M2XGL8 | DNA-directed RNA polymerase II subunit D. | DNA-directed RNA polymerase II subunit E. | 0.999 |
Gasu_02440 | Gasu_40940 | M2Y9C8 | M2XXQ9 | DNA-directed RNA polymerase II subunit D. | DNA-directed RNA polymerase II subunit C. | 0.999 |
Gasu_02440 | Gasu_54740 | M2Y9C8 | M2VUP5 | DNA-directed RNA polymerase II subunit D. | Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.991 |
Gasu_02440 | Gasu_55820 | M2Y9C8 | M2WSF9 | DNA-directed RNA polymerase II subunit D. | DNA-directed RNA polymerase II subunit G. | 0.999 |
Gasu_02440 | MED6 | M2Y9C8 | M2XHR9 | DNA-directed RNA polymerase II subunit D. | Mediator of RNA polymerase II transcription subunit 6; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.978 |
Gasu_04630 | Gasu_02440 | M2Y8J8 | M2Y9C8 | Uncharacterized protein. | DNA-directed RNA polymerase II subunit D. | 0.586 |
Gasu_04630 | Gasu_18000 | M2Y8J8 | M2XLI8 | Uncharacterized protein. | DNA-directed RNA polymerase II subunit I. | 0.730 |
Gasu_04630 | Gasu_25550 | M2Y8J8 | M2W3A7 | Uncharacterized protein. | Mediator of RNA polymerase II transcription subunit 31; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.935 |
Gasu_04630 | Gasu_26550 | M2Y8J8 | M2XIZ1 | Uncharacterized protein. | Transcription initiation factor TFIIB. | 0.624 |
Gasu_04630 | Gasu_26830 | M2Y8J8 | M2W2I2 | Uncharacterized protein. | Mediator of RNA polymerase II transcription subunit 7; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. | 0.983 |
Gasu_04630 | Gasu_34130 | M2Y8J8 | M2XGL8 | Uncharacterized protein. | DNA-directed RNA polymerase II subunit E. | 0.587 |
Gasu_04630 | Gasu_40940 | M2Y8J8 | M2XXQ9 | Uncharacterized protein. | DNA-directed RNA polymerase II subunit C. | 0.660 |
Gasu_04630 | Gasu_54740 | M2Y8J8 | M2VUP5 | Uncharacterized protein. | Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.991 |
Gasu_04630 | Gasu_55820 | M2Y8J8 | M2WSF9 | Uncharacterized protein. | DNA-directed RNA polymerase II subunit G. | 0.615 |
Gasu_04630 | MED6 | M2Y8J8 | M2XHR9 | Uncharacterized protein. | Mediator of RNA polymerase II transcription subunit 6; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.971 |
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