STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gasu_44390Ubiquitin-protein ligase E3. (1119 aa)    
Predicted Functional Partners:
Gasu_31280
E3 ubiquitin-protein ligase TRIP12.
   
 
0.914
Gasu_42920
Ubiquitin-activating enzyme E1; Belongs to the ubiquitin-activating E1 family.
   
 0.687
Gasu_55750
26S proteasome regulatory subunit N1.
    
 
 0.636
Gasu_17740
PI3K/PI4K domain-containing protein.
   
 0.576
Gasu_12640
Nucleotide excision repair protein.
    
 0.563
Gasu_52970
Ubiquitin.
   
 0.562
Gasu_13790
Ubiquitin.
   
 0.562
Gasu_50290
MAGE domain-containing protein.
    
 
 0.552
Gasu_48770
Ubiquitin-activating enzyme E1 C.
   
 0.528
Gasu_61800
Ubiquitin-conjugating enzyme 29; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.522
Your Current Organism:
Galdieria sulphuraria
NCBI taxonomy Id: 130081
Other names: G. sulphuraria, SAG 17.91
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.