Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Gasu_00510 | Gasu_22370 | M2W9U5 | M2Y314 | U3 snoRNP component Utp15p-like protein. | Box C/D snoRNP component Nop56. | 0.999 |
Gasu_00510 | Gasu_31030 | M2W9U5 | M2W1D3 | U3 snoRNP component Utp15p-like protein. | Histone chaperone ASF1. | 0.845 |
Gasu_00510 | Gasu_49810 | M2W9U5 | M2XVT5 | U3 snoRNP component Utp15p-like protein. | Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family. | 0.428 |
Gasu_09590 | Gasu_31030 | M2X5Y8 | M2W1D3 | Serine/threonine protein kinase. | Histone chaperone ASF1. | 0.918 |
Gasu_22370 | Gasu_00510 | M2Y314 | M2W9U5 | Box C/D snoRNP component Nop56. | U3 snoRNP component Utp15p-like protein. | 0.999 |
Gasu_22370 | Gasu_31030 | M2Y314 | M2W1D3 | Box C/D snoRNP component Nop56. | Histone chaperone ASF1. | 0.843 |
Gasu_31030 | Gasu_00510 | M2W1D3 | M2W9U5 | Histone chaperone ASF1. | U3 snoRNP component Utp15p-like protein. | 0.845 |
Gasu_31030 | Gasu_09590 | M2W1D3 | M2X5Y8 | Histone chaperone ASF1. | Serine/threonine protein kinase. | 0.918 |
Gasu_31030 | Gasu_22370 | M2W1D3 | M2Y314 | Histone chaperone ASF1. | Box C/D snoRNP component Nop56. | 0.843 |
Gasu_31030 | Gasu_32450 | M2W1D3 | M2Y0T1 | Histone chaperone ASF1. | Histone acetyltransferase 1. | 0.865 |
Gasu_31030 | Gasu_36550 | M2W1D3 | M2XFW6 | Histone chaperone ASF1. | Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. | 0.996 |
Gasu_31030 | Gasu_40920 | M2W1D3 | M2VYN2 | Histone chaperone ASF1. | Chromatin assembly factor 1 subunit B. | 0.996 |
Gasu_31030 | Gasu_49810 | M2W1D3 | M2XVT5 | Histone chaperone ASF1. | Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family. | 0.999 |
Gasu_31030 | Gasu_56690 | M2W1D3 | M2XTN6 | Histone chaperone ASF1. | SHNi-TPR domain-containing protein. | 0.983 |
Gasu_31030 | Gasu_59640 | M2W1D3 | M2X9B3 | Histone chaperone ASF1. | Histone H3; Belongs to the histone H3 family. | 0.870 |
Gasu_31030 | Gasu_61570 | M2W1D3 | M2VSS2 | Histone chaperone ASF1. | Histone H3. | 0.870 |
Gasu_32450 | Gasu_31030 | M2Y0T1 | M2W1D3 | Histone acetyltransferase 1. | Histone chaperone ASF1. | 0.865 |
Gasu_32450 | Gasu_36550 | M2Y0T1 | M2XFW6 | Histone acetyltransferase 1. | Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. | 0.996 |
Gasu_32450 | Gasu_56690 | M2Y0T1 | M2XTN6 | Histone acetyltransferase 1. | SHNi-TPR domain-containing protein. | 0.995 |
Gasu_32450 | Gasu_59640 | M2Y0T1 | M2X9B3 | Histone acetyltransferase 1. | Histone H3; Belongs to the histone H3 family. | 0.767 |
page 1 of 3