Gasu_04200 protein (Galdieria sulphuraria) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Gasu_04200

ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. (527 aa)

Predicted Functional Partners:

Gasu_47570

0.994

Gasu_40610

0.994

Gasu_52880

0.990

Gasu_14490

0.990

Gasu_13250

0.985

Gasu_40560

0.980

Gasu_47560

0.977

Gasu_59360

0.966

atpH

0.950

Gasu_27220

0.948

Your Current Organism:

Galdieria sulphuraria

NCBI taxonomy Id: 130081
Other names: G. sulphuraria, SAG 17.91

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Gasu_04200	Gasu_13250	M2W8Y7	M2X4L1	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	F-type H+-transporting ATPase subunit gamma.	0.985
Gasu_04200	Gasu_14490	M2W8Y7	M2XLY3	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	F-type H+-transporting ATPase subunit gamma.	0.990
Gasu_04200	Gasu_27220	M2W8Y7	M2XIL7	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	NADH dehydrogenase (Ubiquinone) Fe-S protein 2; Belongs to the complex I 49 kDa subunit family.	0.948
Gasu_04200	Gasu_40560	M2W8Y7	M2VYX9	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	[pt] F-type H+-transporting ATPase subunit beta.	0.980
Gasu_04200	Gasu_40610	M2W8Y7	M2VYY4	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.994
Gasu_04200	Gasu_47560	M2W8Y7	M2WUX8	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.977
Gasu_04200	Gasu_47570	M2W8Y7	M2VWZ2	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	F-type H+-transporting ATPase subunit delta.	0.994
Gasu_04200	Gasu_52880	M2W8Y7	M2XBA6	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	F-type H+-transporting ATPase subunit delta.	0.990
Gasu_04200	Gasu_59360	M2W8Y7	M2XSR0	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	F-type H+-transporting ATPase subunit epsilon.	0.966
Gasu_04200	atpH	M2W8Y7	M2XEV2	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	[pt] F-type H+-transporting ATPase subunit c; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	0.950
Gasu_13250	Gasu_04200	M2X4L1	M2W8Y7	F-type H+-transporting ATPase subunit gamma.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.985
Gasu_13250	Gasu_14490	M2X4L1	M2XLY3	F-type H+-transporting ATPase subunit gamma.	F-type H+-transporting ATPase subunit gamma.	0.609
Gasu_13250	Gasu_27220	M2X4L1	M2XIL7	F-type H+-transporting ATPase subunit gamma.	NADH dehydrogenase (Ubiquinone) Fe-S protein 2; Belongs to the complex I 49 kDa subunit family.	0.792
Gasu_13250	Gasu_40560	M2X4L1	M2VYX9	F-type H+-transporting ATPase subunit gamma.	[pt] F-type H+-transporting ATPase subunit beta.	0.981
Gasu_13250	Gasu_40610	M2X4L1	M2VYY4	F-type H+-transporting ATPase subunit gamma.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.994
Gasu_13250	Gasu_47560	M2X4L1	M2WUX8	F-type H+-transporting ATPase subunit gamma.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.982
Gasu_13250	Gasu_47570	M2X4L1	M2VWZ2	F-type H+-transporting ATPase subunit gamma.	F-type H+-transporting ATPase subunit delta.	0.994
Gasu_13250	Gasu_52880	M2X4L1	M2XBA6	F-type H+-transporting ATPase subunit gamma.	F-type H+-transporting ATPase subunit delta.	0.989
Gasu_13250	Gasu_59360	M2X4L1	M2XSR0	F-type H+-transporting ATPase subunit gamma.	F-type H+-transporting ATPase subunit epsilon.	0.960
Gasu_13250	atpH	M2X4L1	M2XEV2	F-type H+-transporting ATPase subunit gamma.	[pt] F-type H+-transporting ATPase subunit c; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	0.950