STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gasu_51450HIV-1 Vpr-binding protein isoform 1. (1417 aa)    
Predicted Functional Partners:
Gasu_15950
DNA damage-binding protein 1 isoform 2.
    
 
 0.982
Gasu_56970
Ubiquitin-protein ligase (Cullin); Belongs to the cullin family.
   
 
 0.923
Gasu_02700
HD phosphohydrolase superfamily.
    
 
 0.921
Gasu_48480
Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
    
 
 0.858
Gasu_48170
RING-box protein 1.
    
 
 0.808
Gasu_39360
COP9 signalosome complex subunit 5.
    
   0.544
Gasu_20800
Asparaginyl-tRNA synthetase isoform 2.
    
 
 0.525
Gasu_42230
Minichromosome maintenance protein 1 isoform 2.
    
 
 0.492
Gasu_52670
VWFA domain-containing protein.
   
  
 0.447
Your Current Organism:
Galdieria sulphuraria
NCBI taxonomy Id: 130081
Other names: G. sulphuraria, SAG 17.91
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.