Gasu_46430 protein (Galdieria sulphuraria) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Gasu_46430

Calmodulin isoform 2; Belongs to the calmodulin family. (163 aa)

Predicted Functional Partners:

Gasu_00710

0.996

Gasu_42100

0.995

Gasu_46420

0.978

Gasu_43180

0.916

Gasu_38590

0.913

Gasu_39830

0.900

Gasu_16540

0.881

Gasu_21060

0.881

Gasu_41890

0.858

Gasu_37740

0.788

Your Current Organism:

Galdieria sulphuraria

NCBI taxonomy Id: 130081
Other names: G. sulphuraria, SAG 17.91

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Gasu_00710	Gasu_16540	M2Y9Z4	M2X404	Myosin heavy chain; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Uncharacterized protein.	0.578
Gasu_00710	Gasu_21060	M2Y9Z4	M2XKI4	Myosin heavy chain; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Cnn_1N domain-containing protein.	0.578
Gasu_00710	Gasu_37740	M2Y9Z4	M2XFE0	Myosin heavy chain; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Small GTP-binding protein of Ras family.	0.472
Gasu_00710	Gasu_42100	M2Y9Z4	M2XEI9	Myosin heavy chain; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.604
Gasu_00710	Gasu_46430	M2Y9Z4	M2WV27	Myosin heavy chain; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Calmodulin isoform 2; Belongs to the calmodulin family.	0.996
Gasu_16540	Gasu_00710	M2X404	M2Y9Z4	Uncharacterized protein.	Myosin heavy chain; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.578
Gasu_16540	Gasu_37740	M2X404	M2XFE0	Uncharacterized protein.	Small GTP-binding protein of Ras family.	0.426
Gasu_16540	Gasu_46430	M2X404	M2WV27	Uncharacterized protein.	Calmodulin isoform 2; Belongs to the calmodulin family.	0.881
Gasu_21060	Gasu_00710	M2XKI4	M2Y9Z4	Cnn_1N domain-containing protein.	Myosin heavy chain; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.578
Gasu_21060	Gasu_37740	M2XKI4	M2XFE0	Cnn_1N domain-containing protein.	Small GTP-binding protein of Ras family.	0.426
Gasu_21060	Gasu_46430	M2XKI4	M2WV27	Cnn_1N domain-containing protein.	Calmodulin isoform 2; Belongs to the calmodulin family.	0.881
Gasu_37740	Gasu_00710	M2XFE0	M2Y9Z4	Small GTP-binding protein of Ras family.	Myosin heavy chain; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.472
Gasu_37740	Gasu_16540	M2XFE0	M2X404	Small GTP-binding protein of Ras family.	Uncharacterized protein.	0.426
Gasu_37740	Gasu_21060	M2XFE0	M2XKI4	Small GTP-binding protein of Ras family.	Cnn_1N domain-containing protein.	0.426
Gasu_37740	Gasu_42100	M2XFE0	M2XEI9	Small GTP-binding protein of Ras family.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.447
Gasu_37740	Gasu_46430	M2XFE0	M2WV27	Small GTP-binding protein of Ras family.	Calmodulin isoform 2; Belongs to the calmodulin family.	0.788
Gasu_38590	Gasu_39830	M2VZ96	M2XY76	Calmodulin.	Calmodulin.	0.900
Gasu_38590	Gasu_46430	M2VZ96	M2WV27	Calmodulin.	Calmodulin isoform 2; Belongs to the calmodulin family.	0.913
Gasu_39830	Gasu_38590	M2XY76	M2VZ96	Calmodulin.	Calmodulin.	0.900
Gasu_39830	Gasu_46430	M2XY76	M2WV27	Calmodulin.	Calmodulin isoform 2; Belongs to the calmodulin family.	0.900