STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gasu_41120Transducin family protein / WD-40 repeat family protein. (451 aa)    
Predicted Functional Partners:
Gasu_30380
Microfibrillar-associated protein.
   
 0.953
Gasu_55080
U4/U6.U5 tri-snRNP component SNU23.
    
 0.890
Gasu_55940
Pre-mRNA-splicing factor 38A.
   
 0.876
Gasu_56590
Pre-mRNA-processing factor 6.
    
 0.851
Gasu_43650
GRASP55_65 domain-containing protein.
 
 
    0.820
Gasu_37930
Ubiquitin family protein.
    
 0.801
Gasu_46660
U5 snRNP protein, DIM1 family.
    
  0.776
Gasu_24380
Pre-mRNA-processing factor 8.
    
 
 0.739
LSM8
U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.
   
   0.731
Gasu_32670
Small nuclear ribonucleoprotein Sm D3.
   
 
 0.710
Your Current Organism:
Galdieria sulphuraria
NCBI taxonomy Id: 130081
Other names: G. sulphuraria, SAG 17.91
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.