STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gasu_25790Splicing factor-related protein. (379 aa)    
Predicted Functional Partners:
Gasu_20280
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
 0.997
Gasu_38900
Splicing factor 3A subunit 2.
   
 0.993
Gasu_46250
Splicing factor 3A subunit 1.
   
 0.992
Gasu_42360
ATP-dependent RNA helicase.
   
 0.980
Gasu_56460
Pre-mRNA-splicing factor CDC5/CEF1.
   
 
 0.977
Gasu_11010
Splicing factor 3A subunit 3 isoform 2.
   
 0.974
Gasu_37050
RRM domain-containing protein.
 
 
  0.895
Gasu_59990
Pre-mRNA-processing factor 4.
    
 
 0.860
Gasu_46380
Splicing factor 3B subunit 1.
   
 0.820
Gasu_00410
WW domain-containing protein.
   
 0.818
Your Current Organism:
Galdieria sulphuraria
NCBI taxonomy Id: 130081
Other names: G. sulphuraria, SAG 17.91
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.