STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gasu_26220E3 ubiquitin-protein ligase HERC2. (432 aa)    
Predicted Functional Partners:
Gasu_30740
GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.
    
 0.693
Gasu_53080
E3 SUMO-protein ligase RanBP2.
   
 0.633
psaF
[pt] photosystem I subunit III.
   
 
 0.538
psaD
[pt] photosystem I subunit II.
   
 
 0.503
Gasu_17740
PI3K/PI4K domain-containing protein.
    
 0.495
Gasu_42970
Photosystem I subunit O.
   
 
 0.489
Gasu_11130
CSL zinc finger domain-containing protein.
    
 
 0.488
Gasu_36550
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
  0.454
psaB
Photosystem I P700 chlorophyll a apoprotein A2; Belongs to the PsaA/PsaB family.
    
 
 0.424
PsaA
[pt] photosystem I P700 chlorophyll A apoprotein.
    
 
 0.424
Your Current Organism:
Galdieria sulphuraria
NCBI taxonomy Id: 130081
Other names: G. sulphuraria, SAG 17.91
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