STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gasu_16790Polyadenylate-binding protein. (270 aa)    
Predicted Functional Partners:
Gasu_28640
Small nuclear ribonucleoprotein F isoform 1.
    
 0.744
Gasu_51190
U4/U6 small nuclear ribonucleoprotein PRP31.
   
 0.676
Gasu_00100
Small nuclear ribonucleoprotein Sm D2.
   
  0.649
Gasu_32670
Small nuclear ribonucleoprotein Sm D3.
   
  0.638
Gasu_55150
Small nuclear ribonucleoprotein family protein / snRNP family protein.
   
  0.635
Gasu_25970
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
  0.635
Gasu_07880
Small nuclear ribonucleoprotein G.
    
  0.599
Gasu_64820
Ubiquitin thiolesterase/ zinc ion binding protein.
    
  0.576
Gasu_60650
Ubiquitin thiolesterase/ zinc ion binding protein.
    
  0.576
LSM5
U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.
    
  0.571
Your Current Organism:
Galdieria sulphuraria
NCBI taxonomy Id: 130081
Other names: G. sulphuraria, SAG 17.91
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.