STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gasu_03370Ubiquitin-protein ligase. (880 aa)    
Predicted Functional Partners:
Gasu_13310
B30.2/SPRY domain-containing protein.
    
 0.908
Gasu_15310
Transducin family protein / WD-40 repeat family protein.
    
 0.878
Gasu_14720
Bromo domain-containing protein.
   
 0.777
Gasu_61570
Histone H3.
   
 0.694
Gasu_59640
Histone H3; Belongs to the histone H3 family.
   
 0.694
Gasu_36550
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.674
Gasu_35830
Histone acetyltransferase.
    
 0.662
Gasu_24890
Polycomb protein SUZ12.
   
 0.660
Gasu_01940
Uncharacterized protein.
   
 0.619
Gasu_53930
Polycomb protein EED.
   
 0.619
Your Current Organism:
Galdieria sulphuraria
NCBI taxonomy Id: 130081
Other names: G. sulphuraria, SAG 17.91
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.