STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gasu_64200dTDP-4-dehydrorhamnose reductase. (307 aa)    
Predicted Functional Partners:
Gasu_30550
Squalene monooxygenase.
   
 
 0.802
Gasu_60260
Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.
  
 
 0.779
Gasu_25030
C-8 sterol isomerase.
   
 
 0.767
Gasu_09900
C-5 sterol desaturase; Belongs to the sterol desaturase family.
   
 
 0.756
Gasu_24370
Putative ergosterol biosynthetic protein 28 isoform 2.
   
 
 0.751
Gasu_18730
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 0.708
Gasu_49340
40S ribosomal protein S15e; Belongs to the universal ribosomal protein uS19 family.
   
  0.689
Gasu_49660
Oxygen-independent coproporphyrinogen III oxidase.
   
 0.688
Gasu_36510
40S ribosomal protein S3e; Belongs to the universal ribosomal protein uS3 family.
   
 0.686
Gasu_00950
Farnesyl-diphosphate farnesyltransferase.
  
 
 0.679
Your Current Organism:
Galdieria sulphuraria
NCBI taxonomy Id: 130081
Other names: G. sulphuraria, SAG 17.91
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