Gasu_26140 protein (Galdieria sulphuraria) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Gasu_26140

Arsenite methyltransferase. (374 aa)

Predicted Functional Partners:

Gasu_01350

0.874

Gasu_20870

0.534

Gasu_36550

0.490

Gasu_56110

0.459

Gasu_03670

0.457

Gasu_61570

0.450

Gasu_59640

0.450

Gasu_09900

0.446

Gasu_07210

0.445

Gasu_00950

0.442

Your Current Organism:

Galdieria sulphuraria

NCBI taxonomy Id: 130081
Other names: G. sulphuraria, SAG 17.91

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Gasu_00950	Gasu_09900	M2X845	M2X615	Farnesyl-diphosphate farnesyltransferase.	C-5 sterol desaturase; Belongs to the sterol desaturase family.	0.892
Gasu_00950	Gasu_26140	M2X845	M2XIU8	Farnesyl-diphosphate farnesyltransferase.	Arsenite methyltransferase.	0.442
Gasu_01350	Gasu_26140	M2Y9M0	M2XIU8	DUF3641 domain-containing protein.	Arsenite methyltransferase.	0.874
Gasu_03670	Gasu_07210	M2Y9P4	M2XP70	Uncharacterized protein.	RNA-binding protein NOB1 isoform 2.	0.999
Gasu_03670	Gasu_20870	M2Y9P4	M2Y3T4	Uncharacterized protein.	Uncharacterized protein.	0.681
Gasu_03670	Gasu_26140	M2Y9P4	M2XIU8	Uncharacterized protein.	Arsenite methyltransferase.	0.457
Gasu_03670	Gasu_56110	M2Y9P4	M2XAC7	Uncharacterized protein.	Uncharacterized protein.	0.999
Gasu_07210	Gasu_03670	M2XP70	M2Y9P4	RNA-binding protein NOB1 isoform 2.	Uncharacterized protein.	0.999
Gasu_07210	Gasu_20870	M2XP70	M2Y3T4	RNA-binding protein NOB1 isoform 2.	Uncharacterized protein.	0.700
Gasu_07210	Gasu_26140	M2XP70	M2XIU8	RNA-binding protein NOB1 isoform 2.	Arsenite methyltransferase.	0.445
Gasu_07210	Gasu_56110	M2XP70	M2XAC7	RNA-binding protein NOB1 isoform 2.	Uncharacterized protein.	0.999
Gasu_09900	Gasu_00950	M2X615	M2X845	C-5 sterol desaturase; Belongs to the sterol desaturase family.	Farnesyl-diphosphate farnesyltransferase.	0.892
Gasu_09900	Gasu_26140	M2X615	M2XIU8	C-5 sterol desaturase; Belongs to the sterol desaturase family.	Arsenite methyltransferase.	0.446
Gasu_20870	Gasu_03670	M2Y3T4	M2Y9P4	Uncharacterized protein.	Uncharacterized protein.	0.681
Gasu_20870	Gasu_07210	M2Y3T4	M2XP70	Uncharacterized protein.	RNA-binding protein NOB1 isoform 2.	0.700
Gasu_20870	Gasu_26140	M2Y3T4	M2XIU8	Uncharacterized protein.	Arsenite methyltransferase.	0.534
Gasu_20870	Gasu_56110	M2Y3T4	M2XAC7	Uncharacterized protein.	Uncharacterized protein.	0.705
Gasu_26140	Gasu_00950	M2XIU8	M2X845	Arsenite methyltransferase.	Farnesyl-diphosphate farnesyltransferase.	0.442
Gasu_26140	Gasu_01350	M2XIU8	M2Y9M0	Arsenite methyltransferase.	DUF3641 domain-containing protein.	0.874
Gasu_26140	Gasu_03670	M2XIU8	M2Y9P4	Arsenite methyltransferase.	Uncharacterized protein.	0.457